CRC 1340 - Matrix in Vision 

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    13353 Berlin

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Collaborative and sustainable research data management, analysis and visualization

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Project content

Within CRC 1340, various types of complex, multidimensional data are collected and analyzed. Data management support will focus on standardized data collection and archiving procedures, common protocols for image acquisition, and individual project support. The INF-N project will establish a central information hub, called the Matrix in Vision COllabOrative Research Platform (Matrix-COOP), to support the entire lifecycle of research data within the CRC.

Our Team

Project Leaders:
Prof. Dr. rer. nat. Jürgen Braun
Dr. med. Tobias Penzkofer
Prof. Dr. rer. nat. Fabian Praßer

Doctoctoral Researchers (PhD) and Postdoctoral Researchers (PostDoc):

Publications

  • Holub P, Kohlmayer F, Prasser F, Mayrhofer MT, Schlünder I, Martin GM, Casati S, Koumakis L, Wutte A, Kozera Ł, Strapagiel D, Anton G, Zanetti G, Sezerman OU, Mendy M, Valík D, Lavitrano M, Dagher G, Zatloukal K, van Ommen GB, Litton JE. Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health. Biopreserv Biobank. 2018 Apr;16(2):97-105. doi: 10.1089/bio.2017.0110. Epub 2018 Jan 23. PMID: 29359962; PMCID: PMC5906729.

  • Fluck J, Lindstädt B, Ahrens W, Beyan O, Buchner B, Darms J, Depping R, Dierkes J, Neuhausen H, Müller W, Zeeb H, Golebiewski M, Löffler M, Löbe M, Meineke F, Klammt S, Fröhlich H, Hahn H, Schulze M, Pischon T, Nöthlings U, Sax U, Kusch H, Grabenhenrich L, Schmidt CO, Waltemath D, Semler S, Gehrke J, Kirsten T, Prasser F, Thun S, Wieler L, Pigeot I. NFDI4Health – Nationale Forschungsdateninfrastruktur für personenbezogene Gesundheitsdaten. Bausteine Forschungsdatenmanagement. 28. Juli 2021;(2):72-85. Doi: 10.17192/bfdm.2021.2.8331.

  • Barnhill E, Nikolova M, Ariyurek C, Dittmann F, Braun J, Sack I. Fast Robust Dejitter and Interslice Discontinuity Removal in MRI Phase Acquisitions: Application to Magnetic Resonance Elastography. IEEE Trans Med Imaging. 2019 Jul;38(7):1578-1587. doi: 10.1109/TMI.2019.2893369. Epub 2019 Jan 25. PMID: 30703013.

  • Meyer T, Marticorena Garcia S, Tzschätzsch H, Herthum H, Shahryari M, Stencel L, Braun J, Kalra P, Kolipaka A, Sack I. Comparison of inversion methods in MR elastography: An open-access pipeline for processing multifrequency shear-wave data and demonstration in a phantom, human kidneys, and brain. Magn Reson Med. 2022 Jun 12. doi: 10.1002/mrm.29320. Epub ahead of print. PMID: 35691940.

  • Scherer J, Nolden M, Kleesiek J, Metzger J, Kades K, Schneider V, Bach M, Sedlaczek O, Bucher AM, Vogl TJ, Grünwald F, Kühn JP, Hoffmann RT, Kotzerke J, Bethge O, Schimmöller L, Antoch G, Müller HW, Daul A, Nikolaou K, la Fougère C, Kunz WG, Ingrisch M, Schachtner B, Ricke J, Bartenstein P, Nensa F, Radbruch A, Umutlu L, Forsting M, Seifert R, Herrmann K, Mayer P, Kauczor HU, Penzkofer T, Hamm B, Brenner W, Kloeckner R, Düber C, Schreckenberger M, Braren R, Kaissis G, Makowski M, Eiber M, Gafita A, Trager R, Weber WA, Neubauer J, Reisert M, Bock M, Bamberg F, Hennig J, Meyer PT, Ruf J, Haberkorn U, Schoenberg SO, Kuder T, Neher P, Floca R, Schlemmer HP, Maier-Hein K. Joint Imaging Platform for Federated Clinical Data Analytics. JCO Clin Cancer Inform. 2020 Nov;4:1027-1038. doi: 10.1200/CCI.20.00045. PMID: 33166197; PMCID: PMC7713526.

  • Fehrenbach U, Xin S, Hartenstein A, Auer TA, Dräger F, Froböse K, Jann H, Mogl M, Amthauer H, Geisel D, Denecke T, Wiedenmann B, Penzkofer T. Automatized Hepatic Tumor Volume Analysis of Neuroendocrine Liver Metastases by Gd-EOB MRI-A Deep-Learning Model to Support Multidisciplinary Cancer Conference Decision-Making. Cancers (Basel). 2021 May 31;13(11):2726. doi: 10.3390/cancers13112726. PMID: 34072865; PMCID: PMC8199286.

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